PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01529g01006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 394aa    MW: 43563.4 Da    PI: 7.5793
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01529g01006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.8e-1754114257
                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               ++R+++ +eq+++Le+ F++   +p ++e++++ +kl    ++ +++V++WFqNr+ + k+
  Peinf101Scf01529g01006.1  54 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 114
                               89*****************99*************************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.38250115IPR001356Homeobox domain
SuperFamilySSF466894.28E-1250118IPR009057Homeodomain-like
SMARTSM003895.7E-952119IPR001356Homeobox domain
CDDcd000862.92E-853116No hitNo description
Gene3DG3DSA:1.10.10.601.1E-653120IPR009057Homeodomain-like
PfamPF000464.6E-1554114IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNSH HHHHQWQHDI NSSLIQKAPC NPAEGCEERS PEPKPRWNPR  60
PEQIRILEAI FNSGMVNPPR DEIRKIRAKL QEYGQVGDAN VFYWFQNRKS RSKHKQRQST  120
KVNQQTPHNN ITITAPSNSS SSSSDKSSQN STGHHHKSSS SLTFSIGSTN VMDLLNSPTA  180
SVNQQQQTYN FQNEFFLNEP FFFAIEPAPS PTAQSASVTQ GLCFPDYSTS FSSSHHVTNP  240
SAAGLFMSEL MGISQTPSKK TEMNLQSQLM SYTSTVTSAP STTTHSVLPL TTTTTTTTIP  300
ASSHIQGVVE PTGAAPTRST VFINDVAFEV GVGPFNVKEV FGEDAVLIHS SGEPLVTNEW  360
GLTIQPLQHG AFYYLLRTST ATHDHNTIDL VLQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1872820.0EF187282.1 Petunia x hybrida SISTER OF EVERGREEN mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793302.10.0PREDICTED: WUSCHEL-related homeobox 9-like isoform X2
RefseqXP_016489291.10.0PREDICTED: WUSCHEL-related homeobox 9-like
RefseqXP_009793301.10.0PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
TrEMBLA9XDF80.0A9XDF8_PETHY; SISTER OF EVERGREEN
STRINGSolyc02g077390.1.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-53homeobox-3